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Plant Genomics and Plant Science

Scientific Program

Keynote Session:

Meetings International -  Conference Keynote Speaker Dev Mani Pandey photo

Dev Mani Pandey

Birla Institute of Technology, India

Title: Identification of low pH induced differentially expressed genes in rice: An experimental and computational approach

Biography:

Dev Mani Pandey has completed his Ph. D. (Plant Physiology) from Chaudhary Charan Singh, Haryana Agricultural University, Hisar, India. He was Post-Doctoral Fellow and served as Consultant to Plant Breeding, Genetics and Biotechnology, IRRI, Los Banos, Philippines. He is a recipient of Young Scientist Award and presented his research findings and Chaired the Session at National and International meetings in India and abroad. He has organized International Symposium successfully and served as Organizing Committee Member of various International Conference/Congress and has been serving as an editorial board member of repute. Currently he is working as Associate Professor at the Department of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, India.

Abstract:

Rice (Oryza sativa) is a very important crop used in various forms for consumption by majority of the population. Its growth and productivity are affected by variety of biotic and abiotic stresses. Soil acidity is among the various factors depressing the rice crop growth and productivity. Majority of soil in Jharkhand, India is acidic having a pH < 5.5 and one of the major limiting factors for rice production. Considering above challenge investigating such genes which are induced under low pH conditions in the traditional variety of rice making them to be tolerant for acidic stress is a great of interest. For this study surface sterilized seeds of some verities were sown in soil containing pots at varying low pH and kept in growth chamber under controlled conditions. Low pH treated varieties were studied for measuring the changes in morphological, biochemical, molecular and micro-structural parameters. Low pH induced changes in growth and biochemical parameters were observed. RT-PCR based differential gene expression pattern of various genes under acidic stress was overserved. Field emission scanning electron microscope (FESEM) based changes in characteristics of stomata while optical coherence tomography (OCT) based micro-structural changes in different layers of low pH treated leaves were observed. Online available microarray data of A. thaliana grown under low pH were used for finding novel candidate (hub) genes. Rice homolog of these hub genes were identified and studied for Real-Time PCR based gene expression under low pH stress and obtained findings will be presented.

Meetings International -  Conference Keynote Speaker Sarayut Thaikua photo

Sarayut Thaikua

Bureau of Animal Nutrition Development, Thailand

Title: Variation of in vitro dry matter digestibility in Brachiaria ruziziensis populations

Biography:

Sarayut Thaikua studied Biology at Ramkhamheang University, Thailand and graduated as BS in 1996. In 2005, he studied Plant breeding at Khonkaen University, Thailand and graduated as MS in 2009. After that he got the scholarship from Royal Thai government for Ph.D., and he received his Ph.D. in Science of Bioresource Production (Pasture Science) at Kagoshima University, Japan in 2015, with supervised by Prof.Yasuhiro Kawamoto. Then he returned to Thailand, and he has been worked at Bureau of Animal Nutrition Development, Department of Livestock Development in Thailand focusing on forage crop breeding.

Abstract:

In vitro dry matter digestibility (IVDMD) is the important character for tropical forage, Brachiaria improvement (Thaikua et al. 2015), and phenotypic recurrent selection is the effective practical method in breeding for increased IVDMD in open-pollinated forage crops (Burson and Young 2001), The available variance within breeding population is the indicator of the possibility of the successful improvement.   Ten genotypes of diploid B. ruziziensis (Thai population) and 10 genotypes of tetraploid ‘Okinawa-1’ (Ishigaki et. al. 2009) were evaluated in completely randomized design with 2 replications. Each genotype was clonal propagated by stolon with roots, and grew in 20 cmx20cm culture plastic pot containing sand, with 8 cm depth. Plants was supplied by water every day, and enriched fluid nutrient (21-21-21) were applied once a week. All plants were cut for adjustment at 1 month after planting. The average shoots of each plant were collected at 5 weeks after the cut. Each sample was oven dried at 65°C for 48 hours, and ground to pass through a 0.5 mm mesh screen. Pepsin-cellulase method was utilized for IVDMD determination. Analysis of variances showed the significant difference of IVDMD within both populations, with the P-value less than 0.0001 for diploid population and 0.0471 for tetraploid group. In vitro dry matter digestibility means with homogeneous group (Tukey test) of the first population was 77.5 A, 76.5 AB, 76.2 ABC, 76.0 ABCD, 75.0 BCDE, 74.6 CDE, 74.4 DE, 74.0 E, 73.8 E, and 72.0 F, while that of the second population was 77.6 A, 75.0 AB, 74.9 AB, 74.4 AB, 73.6 AB, 73.4 AB, 72.4 AB, 72.2 AB, 71.6 AB, 70.9 B. However, there was no significant different on IVDMD between 2 populations (P=0.0966). This study revealed that it is possible in population improvement for increased IVDMD in both populations.

Meetings International -  Conference Keynote Speaker Mohan C. Kharkwal photo

Mohan C. Kharkwal

Indian Agricultural Research Institute, India

Title: Radiation Technology - A century in service of humanity

Biography:

A former Principal Scientist & President of the Indian Society of Genetics & Plant Breeding and an IAEA Expert, he has worked at the Division of Genetics, ICAR - Indian Agricultural Research Institute, New Delhi for more than 40 years. He has made significant contributions in the field of mutation breeding by breeding four high yielding chickpea mutant varieties – Pusa 408, Pusa 413, Pusa 417 and Pusa 547. These are the very first ever examples of direct use of induced micro-mutants in the world. These four mutant varieties were released and notified by Govt. of India for farmers cultivation.

Abstract:

Ever since the discovery of Infrared radiations by Herschel in 1800 and then Ultraviolet rays in 1801 by Ritter, several other radiations like radio waves, X-Rays, Alpha & Beta Rays, Gamma Rays, Cosmic Rays and Neutron radiationshave been discovered and used successfully in service of humanity in a bigway. Some of these radiations have made significant contributions in the field of agriculture, health and medical services during the last hundred years. A major contribution of these radiations has been made though mutation breeding towards improving the production and productivity of a large number of crops directly used for food and feed of humans and animals. Radiation technology has also been successfully used for safe post-harvest storage, extension of shelf-life of perishable products and their transport all over the world, thus making a substantial contribution to the world trade of agricultural commodities. A detailed global survey of success stories of countries that have made successful use of radiation technology in breeding mutant varieties in a wide range of crop plants will be presented in this lecture.
Radiation processing is emerging as an alternate technology for application to fruits and vegetables. It can be effectively used for sprout control in bulbs and tuber crops like potato and onion. A few commercial facilities for catering to this application are already functioning. The technology has a vast potential for replacing the dangerous fumigants for quarantine treatment. This potential is
also beginning to be tapped for commercial application and is likely to pick up a great deal under the WTO regime for trade in fresh horticultural commodities.
Other potential uses of this technology required to be tapped relate to the delay in ripening and senescence of fruits and vegetables and also for shelf-life extension and hygienization of pre-cut or minimally processed fruits and vegetables. Over the years several techniques have been developed for improving post-harvest shelf-life and quality of fruits and vegetables. These techniques include use of radiations in physical, chemical, bio-chemical and biological agents. Application of many of these agents has advantages as well as limitations. Radiation processing of foods is an environment friendly emerging technology to overcome some of these problems. There is an increasing trend both in advanced countries and many developing countries to centrally process fresh fruits and vegetables, properly packaged, for distribution and marketing.
Irradiation technology has proved to be effective in reducing post-harvest losses, and controlling the stored product insects and the microorganisms. Gamma irradiation has been successfully employed to restrain potato and onion sprouting and kill pests in grain, fruits and spices. Irradiation has proved to be extremely beneficial in terms of prolonging the fruit and vegetable shelf life by 3-5 times.
Meetings International -  Conference Keynote Speaker Karen Swanepoel photo

Karen Swanepoel

Southern African Essential Oil Producers Association, South Africa

Title: The importance of standards for essential and seed oils crops of indigenous plants used in Southern Africa

Biography:

Karen Swanepoel is an Executive Director of SAEOPA (Southern African Essential Oil Producer Association), involved in many industry studies in the field of essential oils since 2000. Lectured Botany, Bio -entrepreneurship, Biotechnology and Environmental Science. Papers at IPUF (indigenous Plant use Forum) and on international level at WOCMAP (World Congress on Medicinal and Aromatic Plants), ISEO (international Society of Essential Oils) , ASNAPP (Agribusiness in Sustainable Natural African Plant Product), Green Gold, SAAB (South African Association of Botanists) , African Corp Science, Agricultural and Training World Conference, CHEMRAWN (Committee on Chemical Research Applied to World Needs), Industrial crops and Rural Enterprises. Publications for the department of trade and industry, Agriculture and Forestry and Acta Horticulturae. Currently a consultant for UNIDO in the GQSP-SA (Global Quality and Standards in South Africa) Project.

Abstract:

The essential oil industry is a fast growing and changing industry and African plants are now fashionable to be included in new products containing natural products. Essential oils e.g. Pelargonium var Rose, Lippia javanica, Eriocephalus punctulatus, Helichrysum splendidum and cold pressed or vegetable oils of indigenous plants amongst others are the focus areas. Adansonia digitata (Baobab) and Schlerocarya birrea (Marula) oil, pulp and powder of both are under supplied in a growing market of currently developed products that have already been accepted by most international companies. Ximenia africana and X. americana, Citrullus lanatus (Kalahari Melon) oils are now researched for developing market demand and for the requirements in natural products industry. There are almost no existing standards for the products of Africa and if the demand is increasing, the most needed standards should be developed at the same time to avoid exploitation. Advantages and challenges have been identified with potential of sustainable crop development. Climate change and pressure on natural resources can be managed if careful sustainable measures are taken in time. This study could assist role players of community projects, agricultural and rural development schemes in decisions of choosing alternative crops and for skills and entrepreneurship development and poverty alleviation. The information can also be applied by government departments, small scale and emerging farmers in the feasibility studies of utilization of natural products as new enterprises to the advantage of the producers of South Africa and the consumer ultimately.

Meetings International -  Conference Keynote Speaker Robert Caine photo

Robert Caine

The University of Sheffield, UK

Title: From evolution to biotechnology: the impacts of genetically modifying stomatal development

Biography:

Robert Caine completed his undergraduate degree at Oxford Brookes University with first-class honors in Biology and beginners Japanese. He subsequently completed his Ph.D. in Plant Molecular Biology and Evolution at the University of Sheffield. He is currently a Research Associate at the University of Sheffield where he works on a Newton Fund grant focusing on protecting rice against climate change derived abiotic stresses. He has published in many high impact journals including Nature Plants, New Phytologist, Plant Physiology, Development and Current Opinion in Plant Biology.

Abstract:

Changes in climate, increasing human population and reducing arable land area will lead to significant challenges in producing enough food. Therefore, increasingly climate-resilient crops will be required. One way to improve crop resilience and yield is via alterations to tiny pores on the epidermis called stomata. These microscopic structures, which have been present on land plants for over 400 million years, are fundamental to the success of land plants and to improving crop performance.

The opening of stomata allows CO2 uptake and regulates water loss, permits a transpiration stream, and aids in nutrient uptake. Conversely, when stomata close, gaseous exchange is restricted (including water loss) and certain pathogens cannot enter. Over longer durations, stomatal development can be altered to more finely tune gaseous exchanges with the environment, and if necessary, tighten defences against pathogens. Typically, plants with fewer stomata have improved drought tolerance and resistance to stomatal pathogens, but this may be accompanied by reduced CO2 and nutrient uptake, and reduced capacity for plant cooling.

Here, I will outline the latest advances relating to how stomatal development and plant performance can potentially be altered via genetic alterations to stomata development, presenting evidence from multiple plant species. First I will consider Arabidopsis thaliana, and then consider stomatal evolution in the non-vascular land plant moss Physcomitrella patens. I will then discuss how reducing stomatal density affects crop plant performance in a number of key species, including barley, rice and wheat. I will conclude up by discussing the future directions of stomatal research.

Meetings International -  Conference Keynote Speaker Vasileios Fotopoulos photo

Vasileios Fotopoulos

Cyprus University of Technology, Cyprus

Title: Advanced nanomaterials in agriculture under a changing climate

Biography:

Vasileios Fotopoulos is Associate Professor in Structural and Functional Plant Biology at the Cyprus University of Technology. His main scientific research focuses on the study of nitro-oxidative signaling cascades involved in plant responses to stress factors, while emphasis is being given in the development of priming technologies towards the amelioration of abiotic stress factors and promotion of plant growth. To date, he is the author of 68 scientific articles published in peer-reviewed journals (h-index=30), while he serves as Associate Editor in BMC Plant Biology, Gene and five other journals.

Abstract:

Global agricultural production is suffering substantial losses due to climate change-related phenomena such as drought and salinity, which lead to tissue damage and, ultimate, major yield losses. The development of sustainable, ‘green’ technologies is therefore becoming increasingly important. Nanotechnology provides invaluable tools to a variety of industrial sectors. Recent focus has been given to the development and optimization of nanomaterials for application in the agricultural industry towards improved growth, plant protection and overall performance based on their small size, high surface to volume ratio and unique optical properties. This presentation provides an up-to-date description of research activities carried out at the Cyprus University of Technology with the employment of advanced nanoparticles and polymers applied at plant and seed level. This technology offers an attractive alternative to established approaches such as conventional breeding and genetic modification with key advantages, representing a characteristic example of integrative plant physiology where multiple disciplines such as materials science, agriculture and analytical chemistry join forces to develop exciting new tools in modern agriculture.

Meetings International -  Conference Keynote Speaker Nimble Giri photo

Nimble Giri

University of Louisiana at Monroe, USA

Title: Ozone stimulates the production of anthocyanins as a secondary antioxidant defense in Arabidopsis thaliana

Biography:

Nimble Giri completed my undergraduate in 2016 from Tribhuvan University, Nepal. I studied botany as a BS student and did my undergraduate thesis on ethnobotany.She came to USA in 2018 as a graduate student at the University of Louisiana at Monroe.She is currently working on Arabidopsis thaliana under the guidance of Dr. Thomas Sasek. He completed is PhD and postdoctoral at Duke University in plant physiological ecology considered the effects of climate change on invasive plants. The objective of our work is to study anthocyanins and their responses to different ozone concentrations as one mechanism of increased ozone resistance.

Abstract:

Ozone is the major air pollutant damaging crops and other vegetation. It causes oxidative stress, resulting in increased synthesis of secondary metabolites. Anthocyanins are naturally occurring secondary metabolites that increase in concentration to fight free radicals and lower damage in leaves. Arabidopsis thaliana, a small flowering plant with short lifecycle is an ideal model organism. Three seed lines varying in anthocyanin production (TT-3, Blh-1, Pap-1) were compared to wild type Col-1. Three other lines were selected with mutations in other antioxidant defenses (Vtc-1, GPA-1, Des-1). Three- to four-week-old seedlings were exposed to 0ppb, 150ppb, 300ppb, 450ppb ozone for eight hours on three consecutive days. Anthocyanin concentrations were determined before exposure and one week after exposure. Lines with more anthocyanins were found to be more resistant as evidenced by less leaf damage. One week after exposures, the anthocyanin lines had increased anthocyanin concentrations up to 5X at 300ppb compared to 0ppb, but not as much at 450ppb. Pap-1, a transformed line that over produces anthocyanins, had the highest anthocyanin production. TT-3, a mutant with no anthocyanins, was severely damaged under 450ppb. In the lines with mutations in other antioxidant defenses, Des-1 and GPA-1 were less sensitive to ozone due to enhanced antioxidant defenses and did not increase anthocyanin concentrations much when exposed to ozone. Vtc-1, deficient in the primary antioxidant defense ascorbate, increased its anthocyanin concentrations 8X even at 150ppb, perhaps in compensation for its lack of primary defense. Results suggest that genetic engineering to enhance anthocyanins could increase crop resistance.

Keynote Session:

Meetings International -  Conference Keynote Speaker Wilson Boardman photo

Wilson Boardman

Micromix Plant Health Ltd., UK

Title: Combating abiotic stress through changing gene expression

Biography:

Wilson Boardman in his early career was working in the pesticide industry in both technical and commercial roles for multi-national manufacturers. Micromix was acquired by the OLMIX group in June 2018 and Wilson is now the Global Ambassador for Plant Care Products for the French owned group. Micromix recently was awarded a research grant by the UK government of a little over $1m to develop its technology facilitating crop development under reduced irrigation or drought conditions. His research interests are; plant nutrition, crop protection, plant pathology and agriculture.

Abstract:

Main aim: to prove the concept of alleviating heat stress in greenhouse-grown peppers by applying micronutrients/ bio stimulants.

Peppers in the UK suffer from heat stress - white washes are used to cover the greenhouses. In 2015/16 there was poor summer with only low impact of heat stress (38 degrees on two occasions). The trial also engaged the UK’s top commercial agronomist Derek Hargreaves. Physiological Effects: Under normal conditions heat stress will cause the plant to cease growth and wilt Gene expression changes, some genes are suppressed, some are stimulated. Plant continues to produce growth hormones, with some changes, wilting is gradual and at higher temperatures, flowering continues, fruit set continues, new growth does not stop.

Conclusions and future work: D1 treatment shows highest yield, fruit number and sugar content; D2 treatment shows the highest average weight per fruit; D1: higher Se, S, K in D1, D2: higher Cu, Mn, Zn, Mg, Fe and P; Roots: D1 has higher dry weight; D2 roots are longer; D1 and D2 have significant high resistance to fruit rotting (heat stress). D1 and D2 show significant differences in expression of “heat” genes.